glm
Linnea Honeker
9/20/2022
perform pairwise correlations and scatterplots for gene transcript copies and flux data
load data tables 1) KO of interest and 2) gene transcript copies. Clean up data times for purposes of this analysis.
correlations between each gene and acetone
## [1] 0.2023995##
## Call:
## lm(formula = merged_subset$K01574 ~ merged_subset$log.flux.acetone)
##
## Residuals:
## Min 1Q Median 3Q Max
## -1.0140 -0.6787 -0.5394 0.3149 2.4021
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 2.7352 0.6088 4.493 0.000369 ***
## merged_subset$log.flux.acetone 0.2964 0.3585 0.827 0.420561
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 1.025 on 16 degrees of freedom
## Multiple R-squared: 0.04097, Adjusted R-squared: -0.01897
## F-statistic: 0.6834 on 1 and 16 DF, p-value: 0.4206correlations between each gene and acetate
## [1] 0.5316064##
## Call:
## lm(formula = merged_subset$log.flux.acetone ~ merged_subset$log.flux.acetate)
##
## Residuals:
## Min 1Q Median 3Q Max
## -1.17162 -0.34942 -0.04867 0.37279 1.15749
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 0.9580 0.2786 3.439 0.00337 **
## merged_subset$log.flux.acetate 0.4692 0.1869 2.511 0.02318 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 0.6052 on 16 degrees of freedom
## Multiple R-squared: 0.2826, Adjusted R-squared: 0.2378
## F-statistic: 6.303 on 1 and 16 DF, p-value: 0.02318## [1] -0.08572158##
## Call:
## lm(formula = merged_subset$log.flux.acetone ~ merged_subset$log.flux.diacetyl)
##
## Residuals:
## Min 1Q Median 3Q Max
## -1.5158 -0.3670 -0.1526 0.4063 1.0834
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 1.7342 0.5367 3.231 0.00523 **
## merged_subset$log.flux.diacetyl -0.1164 0.3382 -0.344 0.73521
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 0.7119 on 16 degrees of freedom
## Multiple R-squared: 0.007348, Adjusted R-squared: -0.05469
## F-statistic: 0.1184 on 1 and 16 DF, p-value: 0.7352